/start.py (26df05e3ec9f549013f400a6f5f5df7fdb617c2e) (1696 bytes) (mode 100644) (type blob)

#!/usr/bin/env python
import datetime
import argparse
import cProfile, pstats, StringIO
from file_importer import FileImporter
from metric_calculator import MetricCalculator
import datetime as dt

print 'Starting metric calculation',dt.datetime.now()
parser = argparse.ArgumentParser(description='Read a Tab-separated Graph Datafile and start Calculation of Metrics and Statistics as configured in config.py')

parser.add_argument('filename', metavar='filename', type=str,
                   help='the name of the data file containing tab separated node ids')

parser.add_argument('--profiling',dest='profiling',action='store_true', help='enable runtime profiling into profiling.txt file')

args = parser.parse_args()

if args.profiling:
  pr = cProfile.Profile()
  s = StringIO.StringIO()
  timestamp = str(datetime.datetime.now().strftime('%Y%m%d_%H%M%S'))
  outfile = open('profiling_output_'+timestamp+'.txt', 'w')
  pr.enable()

fi = FileImporter(args.filename)
graph = fi.read()
#print('This should be a Network X graph',graph)
print('Network X graph has the following number of nodes',graph.number_of_nodes())    
print('Network X graph has the following number of edges',graph.number_of_edges())
graph_gt = fi.read_gt()
print('Graph tool graph has the following number of nodes',graph_gt['graph_gt'].num_vertices())
print('Graph tool graph has the following number of edges',graph_gt['graph_gt'].num_edges())
#print('Gt graph has the following properties')
mc = MetricCalculator(graph,graph_gt)
mc.start()

if args.profiling:
  ps = pstats.Stats(pr, stream=s).sort_stats('cumulative')
  ps.print_stats()
  outfile.write(s.getvalue())  

print 'Ending metric calculation',dt.datetime.now()

Mode Type Size Ref File
100644 blob 6 0d20b6487c61e7d1bde93acf4a14b7a89083a16d .gitignore
100644 blob 103 924a1df9f7338af770d3cf3d4b0ce2673f10d1b0 README.md
100644 blob 0 e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 __init__.py
100644 blob 1256 489636a0073e3dfe2bfd04ee893d609d304a8490 advancedscores.py
100644 blob 4854 b160ebc40fe35a499a9335db937985b806035b46 config.py
040000 tree - 1eae5e19b1eff05e464e361e3f50f3df23f1b754 data
100644 blob 4728 68b7ae967b6cb349e54a32d6d00528321f1825b3 file_importer.py
100644 blob 2132 b09bec79c503afa1126d86335d1372443e207773 graph tool test.py
100644 blob 716 359eb7179fa58d67044228556f7d9c38b5caec85 indexing.py
100644 blob 33232205 7ca601d1ca32abf3244359ce3ad85ea6a1b60010 log
100644 blob 6238 ae4072595be1e113bc28964ec19c6758b1b3ce20 metric_calculator.py
100644 blob 8308 6673fc89a71f9a87f57997fbd96c7ed3c36fb7ff metrics.py
100644 blob 1665 a959a8cc528f486a80a84e2ab233457870d255a1 normalizations.py
100644 blob 1565 32abe33200f0e8dd3bf4973e5956c7ab8545ca4b pearson.py
100644 blob 1696 26df05e3ec9f549013f400a6f5f5df7fdb617c2e start.py
100644 blob 2144 fb03eaa1cd8eb0d6c17b2019fe4c877a32bb7059 statistics.py
Hints:
Before first commit, do not forget to setup your git environment:
git config --global user.name "your_name_here"
git config --global user.email "your@email_here"

Clone this repository using HTTP(S):
git clone https://rocketgit.com/user/coria/coria-backend

Clone this repository using ssh (do not forget to upload a key first):
git clone ssh://rocketgit@ssh.rocketgit.com/user/coria/coria-backend

Clone this repository using git:
git clone git://git.rocketgit.com/user/coria/coria-backend

You are allowed to anonymously push to this repository.
This means that your pushed commits will automatically be transformed into a merge request:
... clone the repository ...
... make some changes and some commits ...
git push origin main