/start.py (26df05e3ec9f549013f400a6f5f5df7fdb617c2e) (1696 bytes) (mode 100644) (type blob)
#!/usr/bin/env python
import datetime
import argparse
import cProfile, pstats, StringIO
from file_importer import FileImporter
from metric_calculator import MetricCalculator
import datetime as dt
print 'Starting metric calculation',dt.datetime.now()
parser = argparse.ArgumentParser(description='Read a Tab-separated Graph Datafile and start Calculation of Metrics and Statistics as configured in config.py')
parser.add_argument('filename', metavar='filename', type=str,
help='the name of the data file containing tab separated node ids')
parser.add_argument('--profiling',dest='profiling',action='store_true', help='enable runtime profiling into profiling.txt file')
args = parser.parse_args()
if args.profiling:
pr = cProfile.Profile()
s = StringIO.StringIO()
timestamp = str(datetime.datetime.now().strftime('%Y%m%d_%H%M%S'))
outfile = open('profiling_output_'+timestamp+'.txt', 'w')
pr.enable()
fi = FileImporter(args.filename)
graph = fi.read()
#print('This should be a Network X graph',graph)
print('Network X graph has the following number of nodes',graph.number_of_nodes())
print('Network X graph has the following number of edges',graph.number_of_edges())
graph_gt = fi.read_gt()
print('Graph tool graph has the following number of nodes',graph_gt['graph_gt'].num_vertices())
print('Graph tool graph has the following number of edges',graph_gt['graph_gt'].num_edges())
#print('Gt graph has the following properties')
mc = MetricCalculator(graph,graph_gt)
mc.start()
if args.profiling:
ps = pstats.Stats(pr, stream=s).sort_stats('cumulative')
ps.print_stats()
outfile.write(s.getvalue())
print 'Ending metric calculation',dt.datetime.now()
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Type |
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Ref |
File |
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blob |
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.gitignore |
100644 |
blob |
103 |
924a1df9f7338af770d3cf3d4b0ce2673f10d1b0 |
README.md |
100644 |
blob |
0 |
e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 |
__init__.py |
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blob |
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489636a0073e3dfe2bfd04ee893d609d304a8490 |
advancedscores.py |
100644 |
blob |
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b160ebc40fe35a499a9335db937985b806035b46 |
config.py |
040000 |
tree |
- |
1eae5e19b1eff05e464e361e3f50f3df23f1b754 |
data |
100644 |
blob |
4728 |
68b7ae967b6cb349e54a32d6d00528321f1825b3 |
file_importer.py |
100644 |
blob |
2132 |
b09bec79c503afa1126d86335d1372443e207773 |
graph tool test.py |
100644 |
blob |
716 |
359eb7179fa58d67044228556f7d9c38b5caec85 |
indexing.py |
100644 |
blob |
33232205 |
7ca601d1ca32abf3244359ce3ad85ea6a1b60010 |
log |
100644 |
blob |
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ae4072595be1e113bc28964ec19c6758b1b3ce20 |
metric_calculator.py |
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blob |
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6673fc89a71f9a87f57997fbd96c7ed3c36fb7ff |
metrics.py |
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blob |
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a959a8cc528f486a80a84e2ab233457870d255a1 |
normalizations.py |
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blob |
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32abe33200f0e8dd3bf4973e5956c7ab8545ca4b |
pearson.py |
100644 |
blob |
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26df05e3ec9f549013f400a6f5f5df7fdb617c2e |
start.py |
100644 |
blob |
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fb03eaa1cd8eb0d6c17b2019fe4c877a32bb7059 |
statistics.py |
Hints:
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