dleucas / wmmsdb (public) (License: GPLv3) (since 2018-07-08) (hash sha1)
A collection of scripts to download, transform and normalize the Watkins Marine Mammal Sound Database.

Credit:

“Watkins Marine Mammal Sound Database, Woods Hole Oceanographic Institution.”

http://cis.whoi.edu/science/B/whalesounds/index.cfm
Clone URLs: https://rocketgit.com/user/dleucas/wmmsdb ssh://rocketgit@ssh.rocketgit.com/user/dleucas/wmmsdb git://git.rocketgit.com/user/dleucas/wmmsdb
master species_names
List of commits:
Subject Hash Author Date (UTC)
working coordinate conversion 93690c423d103a8c643eb736c49f5086c97569ab dleucas 2019-05-17 02:26:16
WIP GeoJSON transformation 0fb3c00fe05abdab66a505526412273340a57c02 dleucas 2018-08-04 03:16:55
add filter by location name 043ca941dd733b0c36274576ec17680255f75646 dleucas 2018-07-25 20:13:46
index settings for location name. also use english for notes 6ccc4e6332fb40b2556c2570e9c3cdbb5a48f8a3 dleucas 2018-07-25 20:13:19
add location names c67e4b4eea6c4ef16337e3eac6eb10ae16393430 dleucas 2018-07-25 18:32:45
use tables for result display and add sort options 19d650a762c7eee577068f17af8af6042e68706f dleucas 2018-07-24 00:28:13
enlarge image on click, display acoustat values cd4cdd355ea4fcd09dbb3c5a3dd46b9e1a2695e5 dleucas 2018-07-23 23:39:39
typo, P2 was not assigned correctly 4fd59e536c917da8a828f30165aae953a6c9455b dleucas 2018-07-23 23:38:58
change spectrogram paramters 14777e7d7c82c664b1fcc3b588fa123e8e124d04 dleucas 2018-07-23 23:38:31
acustat, dl link, spectograms da953b3e7c5c3b4ee2d523ee9773b5c379b4fec1 dleucas 2018-07-22 00:39:51
scripts for processing wave audio files d23b5a2edc5b279ac6998a754a765e6a9e4dcda2 dleucas 2018-07-21 20:04:10
mapping for acoustat time and frequency properties 57007aab9e4b1af93ec97f9fc4743952d3e2ca77 dleucas 2018-07-21 19:59:19
add observation date to UI, facet filter grouping 3fdc0629d9b4dfb8238086569bb4cb666a1657ac dleucas 2018-07-19 22:34:43
image size to 100% and genus list with 50 items 9220f78daa9ad082b2e45b1e115e14747ca8973c dleucas 2018-07-19 19:56:53
add observation date ff39768120d7967104b3da4ca586fef0d7da52db dleucas 2018-07-19 19:55:45
embed sound file, display spectogram 667ac83016e4ffbf0c410057b40abdfd9dc87470 dleucas 2018-07-18 23:48:32
add more filters and display notes d0741e04b40892b2aee2780eeea5e8cc80f70472 dleucas 2018-07-18 20:57:16
ElasticSearch field schema c7d00ee0ec404284ba4f8a6b5851984c0b246d6f dleucas 2018-07-18 20:56:31
(re-)create index with mapping a2d442dbe6c9e37de4dfdba6ed8ab99362914303 dleucas 2018-07-18 20:55:49
add note field for UI display 254ef4bc795c4bc950fed1fdc9331fab4d4aff8d dleucas 2018-07-18 20:54:57
Commit 93690c423d103a8c643eb736c49f5086c97569ab - working coordinate conversion
Author: dleucas
Author date (UTC): 2019-05-17 02:26
Committer name: dleucas
Committer date (UTC): 2019-05-17 02:26
Parent(s): 0fb3c00fe05abdab66a505526412273340a57c02
Signer:
Signing key:
Signing status: N
Tree: 70f4427815c953c7d7b1bc5da28ce597c29f6ee4
File Lines added Lines deleted
GeoJSON.jq 33 5
File GeoJSON.jq changed (mode: 100755) (index d47abaa..c0f2f44)
1 #!/usr/bin/jq -fs
1 #!/usr/bin/jq -fsc
2 2
3 def as_coord: if (startswith("W") or startswith("S")) then "-\(.[1:]).0" else "\(.[1:]).0" end;
3 def as_coord:
4 # Example W073 or W70, degree only, negate
5 if startswith("W") and length <= 4 then
6 -(.[1:] | tonumber)
7 # Example W12404 degree with minutes, negate
8 # Negate after addition
9 elif startswith("W") and length == 6 then
10 -((.[1:4] | tonumber) + (.[4:] | tonumber / 60))
11 # Example S38 degree only, negate
12 elif startswith("S") and length == 3 then
13 -(.[1:] | tonumber)
14 # Degree with minutes, negate
15 elif startswith("S") and length == 5 then
16 -((.[1:3] | tonumber) + (.[3:] | tonumber / 60))
17 # Degree only
18 elif startswith("N") and length == 3 then
19 (.[1:] | tonumber)
20 # Degree with minutes N4439
21 elif startswith("N") and length == 5 then
22 ((.[1:3] | tonumber) + (.[3:] | tonumber / 60))
23 # Degree only
24 elif startswith("E") and length <= 4 then
25 (.[1:] | tonumber)
26 # Degree with minutes
27 elif startswith("E") and length == 5 then
28 ((.[1:3] | tonumber) + (.[3:] | tonumber / 60))
29 else
30 null
31 end;
4 32
5 33 { {
6 34 "type": "FeatureCollection", "type": "FeatureCollection",
 
... ... def as_coord: if (startswith("W") or startswith("S")) then "-\(.[1:]).0" else "\
12 40 "coordinates": "coordinates":
13 41 .GC | split("|") .GC | split("|")
14 42 | map(capture("(?<lat>[NS]{1}\\d{1,4})[A-Z]{1,2}(\\d{1,2})?([A-Z]{1})?\\s+(?<lon>[EW]{1}\\d{1,5})")) | map(capture("(?<lat>[NS]{1}\\d{1,4})[A-Z]{1,2}(\\d{1,2})?([A-Z]{1})?\\s+(?<lon>[EW]{1}\\d{1,5})"))
15 | map([(.lon|as_coord|tonumber),(.lat|as_coord|tonumber)])
16
43 | map([(.lon | as_coord), (.lat | as_coord)])
17 44 }, },
18 45 "properties": { "properties": {
19 46 "id": .RN, "id": .RN,
20 "_source_value": .GC
47 "name": .RN,
48 "description": .NT
21 49 } }
22 50 } }
23 51 ] ]
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