dleucas / wmmsdb (public) (License: GPLv3) (since 2018-07-08) (hash sha1)
A collection of scripts to download, transform and normalize the Watkins Marine Mammal Sound Database.

Credit:

“Watkins Marine Mammal Sound Database, Woods Hole Oceanographic Institution.”

http://cis.whoi.edu/science/B/whalesounds/index.cfm
Clone URLs: https://rocketgit.com/user/dleucas/wmmsdb ssh://rocketgit@ssh.rocketgit.com/user/dleucas/wmmsdb git://git.rocketgit.com/user/dleucas/wmmsdb
master species_names
List of commits:
Subject Hash Author Date (UTC)
rename type to type_of e1fcd27b05eabc8bce06751a9925200e4707168b dleucas 2019-06-14 02:34:15
add animal behavior transformation and documentation 7550db3bbd1c69c9369cf8dfe3a5d1195e761ae2 dleucas 2019-06-14 00:57:16
add lost modified date c4922a44cebebd63da6c23a2a71f97cdb47b4a68 dleucas 2019-06-12 22:46:35
describe remaining db fields e3c7f44ad24a3d7c8e4eb74c777a4eecc3675d75 dleucas 2019-06-11 21:37:06
WIP document acoustat 3a47cfcfa204503f682879d7485a6ef941e248e4 dleucas 2019-06-07 00:17:30
WIP document acoustat 4591875fd32c1c91d20133ff90dcf5676b3c216c dleucas 2019-06-07 00:08:18
WIP document acoustat ccc4a6de663a7272ee3d5777fe1479af549e9938 dleucas 2019-06-06 01:39:08
WIP document acoustat 1c6b03267e3016d9b637775df2b4b153866ac040 dleucas 2019-06-05 22:39:39
add dependency on nav.html and pandoc.css b4f054eb6675117d576fa9462220bc5bc8d15be4 dleucas 2019-06-01 01:12:44
nav title 7c5fadd2e143028d614fab4c31ed7389ed17e6f6 dleucas 2019-06-01 01:12:04
document world map 07b70f4b85731456b559edeecea12b339e724aaf dleucas 2019-06-01 01:11:43
use live ElasticSearch URL in example query b6df3b91ba395f62003fa89f1d6ae3f6a705ea9e dleucas 2019-05-31 23:38:40
Document geo coordinates based on the .GC field d3c9fc90773c6252209074583a00b290633f340c dleucas 2019-05-31 23:24:02
transform geo coordinates b32a76ac0917bc3c8bb85e225b19004bc56ac929 dleucas 2019-05-31 22:26:16
update index mapping with geo_point for location coordinates 510a37c03a86603425c6af347c038d69d7fa0cde dleucas 2019-05-31 22:24:42
WIP search by geo distance 61e13ff42bf7e9d283c7d18087c14bb30c2e69c8 dleucas 2019-05-31 22:16:46
about page: show task progress 9372732e21c753f99d706a474cb3a74394ced1dc dleucas 2019-05-24 01:04:07
data page: describe mapping, clean-up table a78264311f89a3b67d40fa8ba3d768c3ec9b2592 dleucas 2019-05-24 00:33:21
add site navigation, remove clutter 9e0361707284cc01d6795195df6848c1f20e88cc dleucas 2019-05-23 01:21:22
WIP initial changelog 12150e01cbb190f83d9e5f02f1431a4856c780d2 dleucas 2019-05-23 01:20:30
Commit e1fcd27b05eabc8bce06751a9925200e4707168b - rename type to type_of
Author: dleucas
Author date (UTC): 2019-06-14 02:34
Committer name: dleucas
Committer date (UTC): 2019-06-14 02:34
Parent(s): 7550db3bbd1c69c9369cf8dfe3a5d1195e761ae2
Signer:
Signing key:
Signing status: N
Tree: de254b75d57354df9e1432cc4242005348c81bbf
File Lines added Lines deleted
index.mapping.json 16 0
transform.jq 2 2
File index.mapping.json changed (mode: 100644) (index 717574e..e3d62ee)
7 7 "index": "no", "index": "no",
8 8 "type": "string" "type": "string"
9 9 }, },
10 "behavior": {
11 "properties": {
12 "type_of": {
13 "index": "not_analyzed",
14 "type": "string"
15 },
16 "species_code": {
17 "index": "not_analyzed",
18 "type": "string"
19 }
20 }
21 },
10 22 "genus": { "genus": {
11 23 "properties": { "properties": {
12 24 "name": { "name": {
 
63 75 } }
64 76 } }
65 77 }, },
78 "last_modified_date": {
79 "format": "dateOptionalTime",
80 "type": "date"
81 },
66 82 "location": { "location": {
67 83 "properties": { "properties": {
68 84 "coordinates": { "coordinates": {
File transform.jq changed (mode: 100755) (index 35179f2..0016ceb)
... ... def as_coord:
282 282 map(. as $b | match("[A-C][A-Z]\\d+[A-Z]([\\s\\.]+)?$"; "m")//false | map(. as $b | match("[A-C][A-Z]\\d+[A-Z]([\\s\\.]+)?$"; "m")//false |
283 283 if . then if . then
284 284 { {
285 type: ($b[0:.offset] | gsub("^\\s+|\\s+$";"") | if (.|length) > 0 then . else null end),
285 type_of: ($b[0:.offset] | gsub("^\\s+|\\s+$";"") | if (.|length) > 0 then . else null end),
286 286 species_code: .string | gsub("^\\s+|\\s+$";"") species_code: .string | gsub("^\\s+|\\s+$";"")
287 287 } }
288 288 # fallback without species code # fallback without species code
289 289 else else
290 { type: $b | gsub("^\\s+|\\s+$";"") }
290 { type_of: $b | gsub("^\\s+|\\s+$";"") }
291 291 end end
292 292 ) )
293 293 ), ),
Hints:
Before first commit, do not forget to setup your git environment:
git config --global user.name "your_name_here"
git config --global user.email "your@email_here"

Clone this repository using HTTP(S):
git clone https://rocketgit.com/user/dleucas/wmmsdb

Clone this repository using ssh (do not forget to upload a key first):
git clone ssh://rocketgit@ssh.rocketgit.com/user/dleucas/wmmsdb

Clone this repository using git:
git clone git://git.rocketgit.com/user/dleucas/wmmsdb

You are allowed to anonymously push to this repository.
This means that your pushed commits will automatically be transformed into a merge request:
... clone the repository ...
... make some changes and some commits ...
git push origin main