dleucas / wmmsdb (public) (License: GPLv3) (since 2018-07-08) (hash sha1)
A collection of scripts to download, transform and normalize the Watkins Marine Mammal Sound Database.

Credit:

“Watkins Marine Mammal Sound Database, Woods Hole Oceanographic Institution.”

http://cis.whoi.edu/science/B/whalesounds/index.cfm
Clone URLs: https://rocketgit.com/user/dleucas/wmmsdb ssh://rocketgit@ssh.rocketgit.com/user/dleucas/wmmsdb git://git.rocketgit.com/user/dleucas/wmmsdb
master species_names
List of commits:
Subject Hash Author Date (UTC)
document GeoJSON command 8a0c9437ad2c7920d48125ab16795e9d2eb4aae7 dleucas 2019-05-17 02:43:44
working coordinate conversion 93690c423d103a8c643eb736c49f5086c97569ab dleucas 2019-05-17 02:26:16
WIP GeoJSON transformation 0fb3c00fe05abdab66a505526412273340a57c02 dleucas 2018-08-04 03:16:55
add filter by location name 043ca941dd733b0c36274576ec17680255f75646 dleucas 2018-07-25 20:13:46
index settings for location name. also use english for notes 6ccc4e6332fb40b2556c2570e9c3cdbb5a48f8a3 dleucas 2018-07-25 20:13:19
add location names c67e4b4eea6c4ef16337e3eac6eb10ae16393430 dleucas 2018-07-25 18:32:45
use tables for result display and add sort options 19d650a762c7eee577068f17af8af6042e68706f dleucas 2018-07-24 00:28:13
enlarge image on click, display acoustat values cd4cdd355ea4fcd09dbb3c5a3dd46b9e1a2695e5 dleucas 2018-07-23 23:39:39
typo, P2 was not assigned correctly 4fd59e536c917da8a828f30165aae953a6c9455b dleucas 2018-07-23 23:38:58
change spectrogram paramters 14777e7d7c82c664b1fcc3b588fa123e8e124d04 dleucas 2018-07-23 23:38:31
acustat, dl link, spectograms da953b3e7c5c3b4ee2d523ee9773b5c379b4fec1 dleucas 2018-07-22 00:39:51
scripts for processing wave audio files d23b5a2edc5b279ac6998a754a765e6a9e4dcda2 dleucas 2018-07-21 20:04:10
mapping for acoustat time and frequency properties 57007aab9e4b1af93ec97f9fc4743952d3e2ca77 dleucas 2018-07-21 19:59:19
add observation date to UI, facet filter grouping 3fdc0629d9b4dfb8238086569bb4cb666a1657ac dleucas 2018-07-19 22:34:43
image size to 100% and genus list with 50 items 9220f78daa9ad082b2e45b1e115e14747ca8973c dleucas 2018-07-19 19:56:53
add observation date ff39768120d7967104b3da4ca586fef0d7da52db dleucas 2018-07-19 19:55:45
embed sound file, display spectogram 667ac83016e4ffbf0c410057b40abdfd9dc87470 dleucas 2018-07-18 23:48:32
add more filters and display notes d0741e04b40892b2aee2780eeea5e8cc80f70472 dleucas 2018-07-18 20:57:16
ElasticSearch field schema c7d00ee0ec404284ba4f8a6b5851984c0b246d6f dleucas 2018-07-18 20:56:31
(re-)create index with mapping a2d442dbe6c9e37de4dfdba6ed8ab99362914303 dleucas 2018-07-18 20:55:49
Commit 8a0c9437ad2c7920d48125ab16795e9d2eb4aae7 - document GeoJSON command
Author: dleucas
Author date (UTC): 2019-05-17 02:43
Committer name: dleucas
Committer date (UTC): 2019-05-17 02:43
Parent(s): 93690c423d103a8c643eb736c49f5086c97569ab
Signer:
Signing key:
Signing status: N
Tree: ab1cc5ee7213ce08d5fe281105a8dc9490e73247
File Lines added Lines deleted
README.md 7 2
File README.md changed (mode: 100644) (index 8421376..e008281)
... ... Make the Sound Database more accessible and useful for researchers
16 16 - Import metadata into SQLite for advanced queries - Import metadata into SQLite for advanced queries
17 17 - Count coverage of data before and after transformation - Count coverage of data before and after transformation
18 18
19 Tools: bash, curl, wget, jq, xidel, xpath, regex, ElasticSearch, sqlite
20
21 19 # Install # Install
22 20
23 21 TODO TODO
24 22
23 Tools used: bash, curl, wget, jq, xidel, xpath, regex, ElasticSearch, sqlite
24
25 25 # Usage # Usage
26 26
27 27 - ./download.sh - ./download.sh
28 28 - ./transform.sh - ./transform.sh
29 29 - ./index.sh - ./index.sh
30
31 # Transform to GeoJSON
32
33 - ./GeoJSON.jq data/rn/*json > wmmsdb.geojson
34
Hints:
Before first commit, do not forget to setup your git environment:
git config --global user.name "your_name_here"
git config --global user.email "your@email_here"

Clone this repository using HTTP(S):
git clone https://rocketgit.com/user/dleucas/wmmsdb

Clone this repository using ssh (do not forget to upload a key first):
git clone ssh://rocketgit@ssh.rocketgit.com/user/dleucas/wmmsdb

Clone this repository using git:
git clone git://git.rocketgit.com/user/dleucas/wmmsdb

You are allowed to anonymously push to this repository.
This means that your pushed commits will automatically be transformed into a merge request:
... clone the repository ...
... make some changes and some commits ...
git push origin main